Sequence is char []

[jalview.git] / src / jalview / io / BLCFile.java

diff --git a/src/jalview/io/BLCFile.java b/src/jalview/io/BLCFile.java
index ceeac64..4a9e777 100755 (executable)
--- a/src/jalview/io/BLCFile.java
+++ b/src/jalview/io/BLCFile.java
@@ -188,9 +188,9 @@ public class BLCFile extends AlignFile
         {\r
             out.append(">" + printId(s[i]) +"\n");\r
 \r
-            if (s[i].getSequence().length() > max)\r
+            if (s[i].getSequence().length > max)\r
             {\r
-                max = s[i].getSequence().length();\r
+                max = s[i].getSequence().length;\r
             }\r
 \r
             i++;\r
@@ -204,9 +204,9 @@ public class BLCFile extends AlignFile
 \r
             while ((i < s.length) && (s[i] != null))\r
             {\r
-                if (s[i].getSequence().length() > j)\r
+                if (s[i].getSequence().length > j)\r
                 {\r
-                    out.append(s[i].getSequence().substring(j, j + 1));\r
+                    out.append(s[i].getSequenceAsString(j, j + 1));\r
                 }\r
                 else\r
                 {\r