import jalview.datamodel.AlignmentExportData;
import jalview.exceptions.NoFileSelectedException;
import jalview.gui.IProgressIndicator;
+import jalview.gui.OOMWarning;
import jalview.json.binding.biojs.BioJSReleasePojo;
import jalview.json.binding.biojs.BioJSRepositoryPojo;
import jalview.util.MessageManager;
}
}
- public void exportJalviewAlignmentAsBioJsHtmlFile()
+ public void exportJalviewAlignmentAsBioJsHtmlFile(String outputFile)
{
+ // String outputFile = null;
try
{
- String outputFile = getOutputFile();
- // String jalviewAlignmentJson = JSONFile.getJSONData(ap);
+ if (outputFile == null)
+ {
+ outputFile = getOutputFile();
+ }
AlignExportSettingI exportSettings = new AlignExportSettingI()
{
@Override
} catch (NoFileSelectedException ex)
{
// do noting if no file was selected
+ } catch (OutOfMemoryError err)
+ {
+ System.out.println("########################\n" + "OUT OF MEMORY "
+ + outputFile + "\n" + "########################");
+ new OOMWarning("Creating Image for " + outputFile, err);
} catch (Exception e)
{
+ if (pIndicator != null && !headless)
+ {
pIndicator.setProgressBar(MessageManager.formatMessage(
"info.error_creating_file", "HTML"), pSessionId);
+ }
e.printStackTrace();
}
}