JAL-2428 unused method deleted

[jalview.git] / src / jalview / io / BioJsHTMLOutput.java

diff --git a/src/jalview/io/BioJsHTMLOutput.java b/src/jalview/io/BioJsHTMLOutput.java
index 1be97f5..fd9c584 100644 (file)
--- a/src/jalview/io/BioJsHTMLOutput.java
+++ b/src/jalview/io/BioJsHTMLOutput.java
@@ -68,41 +68,25 @@ public class BioJsHTMLOutput extends HTMLOutput
     exportStarted();
     try
     {
-
       if (outputFile == null)
       {
         outputFile = getOutputFile();
       }
       generatedFile = new File(outputFile);
-
-      String bioJSON = getBioJSONData();
-      String bioJSTemplateString = HTMLOutput.readFileAsString(getCurrentBJSTemplateFile());
-      String generatedBioJsWithJalviewAlignmentAsJson = bioJSTemplateString
-              .replaceAll("#sequenceData#", bioJSON).toString();
-
-      PrintWriter out = new java.io.PrintWriter(new java.io.FileWriter(
-              generatedFile));
-      out.print(generatedBioJsWithJalviewAlignmentAsJson);
-      out.flush();
-      out.close();
-      exportCompleted();
-      setProgressMessage(MessageManager.formatMessage(
-              "status.export_complete", "BioJS"));
-
-    } catch (NoFileSelectedException ex)
-    {
-      // do noting if no file was selected
-    } catch (OutOfMemoryError err)
+    } catch (NoFileSelectedException e)
     {
-      System.out.println("########################\n" + "OUT OF MEMORY "
-              + outputFile + "\n" + "########################");
-      new OOMWarning("Creating Image for " + outputFile, err);
+      setProgressMessage(MessageManager.formatMessage(
+              "status.cancelled_image_export_operation", "BioJS MSA"));
+      return;
     } catch (Exception e)
     {
       setProgressMessage(MessageManager.formatMessage(
-              "info.error_creating_file", "HTML"));
+              "info.error_creating_file", "BioJS MSA"));
       e.printStackTrace();
+      return;
     }
+    new Thread(this).start();
+
   }
 
 
@@ -294,4 +278,38 @@ public class BioJsHTMLOutput extends HTMLOutput
     return generatedFile;
   }
 
+  @Override
+  public void run()
+  {
+    try
+    {
+      String bioJSON = getBioJSONData();
+      String bioJSTemplateString = HTMLOutput
+              .readFileAsString(getCurrentBJSTemplateFile());
+      String generatedBioJsWithJalviewAlignmentAsJson = bioJSTemplateString
+              .replaceAll("#sequenceData#", bioJSON).toString();
+
+      PrintWriter out = new java.io.PrintWriter(new java.io.FileWriter(
+              generatedFile));
+      out.print(generatedBioJsWithJalviewAlignmentAsJson);
+      out.flush();
+      out.close();
+      setProgressMessage(MessageManager.formatMessage(
+              "status.export_complete", "BioJS"));
+      exportCompleted();
+
+    } catch (OutOfMemoryError err)
+    {
+      System.out.println("########################\n" + "OUT OF MEMORY "
+              + generatedFile + "\n" + "########################");
+      new OOMWarning("Creating Image for " + generatedFile, err);
+    } catch (Exception e)
+    {
+      setProgressMessage(MessageManager.formatMessage(
+              "info.error_creating_file", "HTML"));
+      e.printStackTrace();
+    }
+
+  }
+
 }