currentSeq and set description in dataset

[jalview.git] / src / jalview / io / DBRefFetcher.java

diff --git a/src/jalview/io/DBRefFetcher.java b/src/jalview/io/DBRefFetcher.java
index 23e5bf6..d57f3be 100644 (file)
--- a/src/jalview/io/DBRefFetcher.java
+++ b/src/jalview/io/DBRefFetcher.java
@@ -1,6 +1,6 @@
 /*\r
 * Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
 *\r
 * This program is free software; you can redistribute it and/or\r
 * modify it under the terms of the GNU General Public License\r
@@ -292,7 +292,7 @@ public class DBRefFetcher implements Runnable
       System.out.println("Adding dbref to "+sequence[m].getName()+" : "+\r
                          entry.getAccession().elementAt(0).toString());\r
 \r
-      String nonGapped = AlignSeq.extractGaps("-. ", sequence[m].getSequence());\r
+      String nonGapped = AlignSeq.extractGaps("-. ", sequence[m].getSequence()).toUpperCase();\r
 \r
       int absStart = entry.getUniprotSequence().getContent().indexOf(\r
           nonGapped.toString());\r