{\r
SequenceI[] sequences;\r
AlignFrame af;\r
+ FeatureSettings fsettings;\r
StringBuffer sbuffer = new StringBuffer();\r
Vector selectedSources;\r
+ boolean cancelled = false;\r
\r
long startTime;\r
\r
* @param ap DOCUMENT ME!\r
*/\r
public DasSequenceFeatureFetcher(SequenceI[] sequences,\r
- final AlignFrame af,\r
+ FeatureSettings fsettings,\r
Vector selectedSources)\r
{\r
this.selectedSources = selectedSources;\r
this.sequences = sequences;\r
- this.af = af;\r
+ this.af = fsettings.af;\r
\r
int uniprotCount = 0;\r
for (int i = 0; i < selectedSources.size(); i++)\r
*/\r
void startFetching()\r
{\r
+ cancelled = false;\r
startTime = System.currentTimeMillis();\r
af.setProgressBar("Fetching DAS Sequence Features", startTime);\r
\r
\r
sourcesRemaining = selectedSources.size();\r
//Now sending requests one at a time to each server\r
- for (int sourceIndex = 0; sourceIndex < selectedSources.size();\r
+ for (int sourceIndex = 0;\r
+ sourceIndex < selectedSources.size()\r
+ && !cancelled;\r
sourceIndex++)\r
{\r
DasSource dasSource = (DasSource) selectedSources.elementAt(\r
}\r
}\r
\r
+ public void cancel()\r
+ {\r
+ af.setProgressBar("DAS Feature Fetching Cancelled", startTime);\r
+ cancelled = true;\r
+ }\r
+\r
int sourcesRemaining=0;\r
void responseComplete(DasSource dasSource, SequenceI seq)\r
{\r
if (seq != null)\r
{\r
- for (int seqIndex = 0; seqIndex < sequences.length-1; seqIndex++)\r
+ for (int seqIndex = 0;\r
+ seqIndex < sequences.length-1\r
+ && !cancelled; seqIndex++)\r
{\r
if (sequences[seqIndex] == seq)\r
{\r
\r
if(af.featureSettings!=null)\r
af.featureSettings.setTableData();\r
+\r
+ fsettings.complete();\r
}\r
\r
}\r