StringBuffer sb = new StringBuffer();
boolean firstLine = true;
- String line;
+ String line,uline;
Sequence seq = null;
boolean annotation = false;
- while ((line = nextLine()) != null)
+ while ((uline = nextLine()) != null)
{
- line = line.trim();
+ line = uline.trim();
if (line.length() > 0)
{
if (line.charAt(0) == '>')
}
else
{
- sb.append(line);
+ sb.append(annotation ? uline : line);
}
}
}