reinstating class implementation.

[jalview.git] / src / jalview / io / FastaFile.java

diff --git a/src/jalview/io/FastaFile.java b/src/jalview/io/FastaFile.java
index 71d372e..fe5e02f 100755 (executable)
--- a/src/jalview/io/FastaFile.java
+++ b/src/jalview/io/FastaFile.java
@@ -33,6 +33,13 @@ import java.util.*;
  */\r
 public class FastaFile extends AlignFile\r
 {\r
+  /**\r
+   * Length of a sequence line\r
+   */\r
+  int len = 72;\r
+\r
+  StringBuffer out;\r
+\r
     /**\r
      * Creates a new FastaFile object.\r
      */\r
@@ -159,7 +166,6 @@ public class FastaFile extends AlignFile
         }\r
     }\r
 \r
-\r
     /**\r
      * DOCUMENT ME!\r
      *\r
@@ -172,8 +178,7 @@ public class FastaFile extends AlignFile
      */\r
     public String print(SequenceI[] s)\r
     {\r
-        int len = 72;\r
-        StringBuffer out = new StringBuffer();\r
+        out = new StringBuffer();\r
         int i = 0;\r
 \r
         while ((i < s.length) && (s[i] != null))\r