JAL-653 gff version number field

[jalview.git] / src / jalview / io / FeaturesFile.java

diff --git a/src/jalview/io/FeaturesFile.java b/src/jalview/io/FeaturesFile.java
index baf9b82..9bdc4e3 100755 (executable)
--- a/src/jalview/io/FeaturesFile.java
+++ b/src/jalview/io/FeaturesFile.java
@@ -60,6 +60,8 @@ public class FeaturesFile extends AlignFile
    */
   private boolean doGffSource = true;
 
+  private int gffversion;
+
   /**
    * Creates a new FeaturesFile object.
    */
@@ -635,6 +637,9 @@ public class FeaturesFile extends AlignFile
       resetMatcher();
     } catch (Exception ex)
     {
+      // should report somewhere useful for UI if necessary
+      warningMessage = ((warningMessage == null) ? "" : warningMessage)
+              + "Parsing error at\n" + line;
       System.out.println("Error parsing feature file: " + ex + "\n" + line);
       ex.printStackTrace(System.err);
       resetMatcher();