JAL-1443 bug fix for loading pasted alignments from clipboard via the file loader

[jalview.git] / src / jalview / io / FeaturesFile.java

diff --git a/src/jalview/io/FeaturesFile.java b/src/jalview/io/FeaturesFile.java
index 44af9ad..fbe871b 100755 (executable)
--- a/src/jalview/io/FeaturesFile.java
+++ b/src/jalview/io/FeaturesFile.java
@@ -22,7 +22,6 @@ package jalview.io;
 
 import jalview.analysis.SequenceIdMatcher;
 import jalview.datamodel.AlignedCodonFrame;
-import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.SequenceDummy;
 import jalview.datamodel.SequenceFeature;
@@ -171,14 +170,14 @@ public class FeaturesFile extends AlignFile
   }
 
   @Override
-  public void addAnnotations(Alignment al)
+  public void addAnnotations(AlignmentI al)
   {
     // TODO Auto-generated method stub
     super.addAnnotations(al);
   }
 
   @Override
-  public void addProperties(Alignment al)
+  public void addProperties(AlignmentI al)
   {
     // TODO Auto-generated method stub
     super.addProperties(al);
@@ -1385,7 +1384,7 @@ public class FeaturesFile extends AlignFile
             out.append(next[j].end);
             out.append("\t");
             out.append(next[j].type);
-            if (next[j].score != Float.NaN)
+            if (!Float.isNaN(next[j].score))
             {
               out.append("\t");
               out.append(next[j].score);