package jalview.io;
import jalview.api.ComplexAlignFile;
+import jalview.api.FeaturesDisplayedI;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.ColumnSelection;
import jalview.datamodel.PDBEntry;
.isShowSeqFeatures();
ColourSchemeI cs = ((ComplexAlignFile) source)
.getColourScheme();
+ FeaturesDisplayedI fd = ((ComplexAlignFile) source)
+ .getDisplayedFeatures();
alignFrame = new AlignFrame(al, hiddenSeqs, colSel,
AlignFrame.DEFAULT_WIDTH, AlignFrame.DEFAULT_HEIGHT);
alignFrame.getViewport().setShowSequenceFeatures(
showSeqFeatures);
+ alignFrame.getViewport().setFeaturesDisplayed(fd);
alignFrame.changeColour(cs);
}
else