JAL-2349 dummy contact matrix annotation row

[jalview.git] / src / jalview / io / FileLoader.java

diff --git a/src/jalview/io/FileLoader.java b/src/jalview/io/FileLoader.java
index 3ad74c7..5febda6 100755 (executable)
--- a/src/jalview/io/FileLoader.java
+++ b/src/jalview/io/FileLoader.java
@@ -28,6 +28,7 @@ import jalview.bin.Cache;
 import jalview.bin.Jalview;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.ContactMatrixTest;
 import jalview.datamodel.PDBEntry;
 import jalview.datamodel.SequenceI;
 import jalview.gui.AlignFrame;
@@ -335,6 +336,8 @@ public class FileLoader implements Runnable
 
         if ((al != null) && (al.getHeight() > 0) && al.hasValidSequence())
         {
+          al.addContactList(new ContactMatrixTest(al.getWidth()));
+
           // construct and register dataset sequences
           for (SequenceI sq : al.getSequences())
           {