Merge branch 'features/JAL-1605_html-svg-export' into develop

[jalview.git] / src / jalview / io / FileLoader.java

diff --git a/src/jalview/io/FileLoader.java b/src/jalview/io/FileLoader.java
index 82b94c3..833f590 100755 (executable)
--- a/src/jalview/io/FileLoader.java
+++ b/src/jalview/io/FileLoader.java
@@ -152,6 +152,7 @@ public class FileLoader implements Runnable
   public AlignFrame LoadFileWaitTillLoaded(FileParse source, String format)
   {
     this.source = source;
+
     file = source.getInFile();
     protocol = source.type;
     this.format = format;
@@ -352,6 +353,11 @@ public class FileLoader implements Runnable
             {
               alignFrame.setFileName(file, format);
             }
+            if (source instanceof HtmlFile)
+            {
+              ((HtmlFile) source).LoadAlignmentFeatures(alignFrame);
+
+            }
             if (raiseGUI)
             {
               // add the window to the GUI