/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
*
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
*/
package jalview.io;
* construct a Fileloader that may raise errors non-interactively
*
* @param raiseGUI
- * true if errors are to be raised as GUI dialog boxes
+ * true if errors are to be raised as GUI dialog boxes
*/
public FileLoader(boolean raiseGUI)
{
Vector recent = new Vector();
if (protocol.equals(FormatAdapter.PASTE))
{
- // do nothing if the file was pasted in as text... there is no filename to refer to it as.
+ // do nothing if the file was pasted in as text... there is no filename to
+ // refer to it as.
return;
}
String type = protocol.equals(FormatAdapter.FILE) ? "RECENT_FILE"
format = new IdentifyFile().Identify(file, protocol);
}
}
+ // TODO: cache any stream datasources as a temporary file (eg. PDBs
+ // retrieved via URL)
if (Desktop.desktop != null && Desktop.desktop.isShowMemoryUsage())
{
System.gc();
memused = (rt.maxMemory() - rt.totalMemory() + rt.freeMemory()); // free
- // memory
- // before
- // load
+ // memory
+ // before
+ // load
}
loadtime = -System.currentTimeMillis();
Alignment al = null;
// System.gc();
memused = memused
- (rt.maxMemory() - rt.totalMemory() + rt.freeMemory()); // difference
- // in free
- // memory
- // after
- // load
+ // in free
+ // memory
+ // after
+ // load
if (Desktop.desktop != null && Desktop.desktop.isShowMemoryUsage())
{
if (alignFrame != null)