uses paintrefresher

[jalview.git] / src / jalview / io / FileParse.java

diff --git a/src/jalview/io/FileParse.java b/src/jalview/io/FileParse.java
index 5f2e856..0c46a17 100755 (executable)
--- a/src/jalview/io/FileParse.java
+++ b/src/jalview/io/FileParse.java
@@ -1,46 +1,63 @@
+/*\r
+* Jalview - A Sequence Alignment Editor and Viewer\r
+* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+*\r
+* This program is free software; you can redistribute it and/or\r
+* modify it under the terms of the GNU General Public License\r
+* as published by the Free Software Foundation; either version 2\r
+* of the License, or (at your option) any later version.\r
+*\r
+* This program is distributed in the hope that it will be useful,\r
+* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+* GNU General Public License for more details.\r
+*\r
+* You should have received a copy of the GNU General Public License\r
+* along with this program; if not, write to the Free Software\r
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
+*/\r
 package jalview.io;\r
 \r
 import java.io.*;\r
-import java.net.*;\r
-\r
-public class FileParse {\r
 \r
-  public File   inFile;\r
-  public int    fileSize;\r
-  public int    noLines;\r
-\r
-  protected String          type;\r
-  protected BufferedReader dataIn;\r
+import java.net.*;\r
 \r
-  public FileParse() {}\r
 \r
-  public FileParse(String fileStr, String type) throws MalformedURLException, IOException\r
-  {\r
+public class FileParse {\r
+    public File inFile;\r
+    public int fileSize;\r
+    public int noLines;\r
+    protected String type;\r
+    protected BufferedReader dataIn;\r
 \r
-    this.type = type;\r
+    public FileParse() {\r
+    }\r
 \r
-    if (type.equals("File")) {\r
-      this.inFile = new File(fileStr);\r
-      this.fileSize = (int)inFile.length();\r
+    public FileParse(String fileStr, String type)\r
+        throws MalformedURLException, IOException {\r
+        this.type = type;\r
+\r
+        if (type.equals("File")) {\r
+            this.inFile = new File(fileStr);\r
+            this.fileSize = (int) inFile.length();\r
+\r
+            dataIn = new BufferedReader(new FileReader(fileStr));\r
+        } else if (type.equals("URL")) {\r
+            URL url = new URL(fileStr);\r
+            this.fileSize = 0;\r
+            dataIn = new BufferedReader(new InputStreamReader(url.openStream()));\r
+        } else if (type.equals("Paste")) {\r
+            dataIn = new BufferedReader(new StringReader(fileStr));\r
+        }\r
+    }\r
 \r
-      dataIn = new BufferedReader(new FileReader( fileStr ));\r
+    public String nextLine() throws IOException {\r
+        String next = dataIn.readLine();\r
 \r
-    } else if (type.equals("URL")) {\r
-      URL url = new URL(fileStr);\r
-      this.fileSize = 0;\r
-      dataIn = new BufferedReader(new InputStreamReader( url.openStream() ));\r
-    } else if(type.equals("Paste"))\r
-    {\r
-      dataIn = new BufferedReader(new StringReader(fileStr));\r
-    }\r
-  }\r
+        if (next != null) {\r
+            noLines++;\r
+        }\r
 \r
-  public String nextLine() throws IOException {\r
-    String next = dataIn.readLine();\r
-    if (next != null) {\r
-      noLines++;\r
+        return next;\r
     }\r
-    return next;\r
-  }\r
-\r
 }\r