/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
// same data source
protected char suffixSeparator = '#';
-
+ /**
+ * character used to write newlines
+ */
+ protected String newline = System.getProperty("line.separator");
+ public void setNewlineString(String nl)
+ {
+ newline = nl;
+ }
+ public String getNewlineString()
+ {
+ return newline;
+ }
/**
* '#' separated string tagged on to end of filename or url that was clipped
* off to resolve to valid filename
}
- public Reader getReader() throws IOException
+ /**
+ * get the underlying bufferedReader for this data source.
+ * @return null if no reader available
+ * @throws IOException
+ */
+ public Reader getReader()
{
- if (dataIn != null && dataIn.ready())
+ if (dataIn != null) // Probably don't need to test for readiness && dataIn.ready())
{
return dataIn;
}
return null;
}
-
- public static String checkProtocol(String file)
- {
- String protocol = jalview.io.FormatAdapter.FILE;
-
- if (file.indexOf("http:") > -1 || file.indexOf("file:") > -1)
- {
- protocol = jalview.io.FormatAdapter.URL;
- }
- return protocol;
- }
}