Response to bug mantis?id=8187 - some quick hacks to read and write david's MSF file...

[jalview.git] / src / jalview / io / FormatAdapter.java

diff --git a/src/jalview/io/FormatAdapter.java b/src/jalview/io/FormatAdapter.java
index dba0c61..3e5e250 100755 (executable)
--- a/src/jalview/io/FormatAdapter.java
+++ b/src/jalview/io/FormatAdapter.java
@@ -9,6 +9,7 @@ public class FormatAdapter
   static{\r
     formats.addElement("FASTA");\r
     formats.addElement("MSF");\r
+    formats.addElement("PileUp");\r
     formats.addElement("CLUSTAL");\r
     formats.addElement("BLC");\r
     formats.addElement("PIR");\r
@@ -25,6 +26,8 @@ public class FormatAdapter
         afile = new FastaFile(inFile, type);\r
       else if (format.equals("MSF"))\r
         afile = new MSFfile(inFile, type);\r
+      else if (format.equals("PileUp"))\r
+              afile = new PileUpfile(inFile, type);\r
       else if (format.equals("CLUSTAL"))\r
         afile = new ClustalFile(inFile, type);\r
       else if (format.equals("BLC"))\r
@@ -59,6 +62,8 @@ public class FormatAdapter
         afile = new FastaFile();\r
       else if (format.equals("MSF"))\r
         afile = new MSFfile();\r
+      else if (format.equals("PileUp"))\r
+        afile = new PileUpfile();\r
       else if (format.equals("CLUSTAL"))\r
         afile = new ClustalFile();\r
       else if (format.equals("BLC"))\r