*/
package jalview.io;
+import java.io.File;
+import java.io.IOException;
import java.util.Locale;
import jalview.api.AlignExportSettingsI;
import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceGroup;
import jalview.datamodel.SequenceI;
+import jalview.structure.StructureImportSettings;
+import jalview.structure.StructureImportSettings.TFType;
import jalview.util.Comparison;
-import java.io.File;
-import java.io.IOException;
-
/**
* Additional formatting methods used by the application in a number of places.
*
}
@Override
+ public AlignmentI readFile(File selectedFile, String file,
+ DataSourceType sourceType, FileFormatI fileFormat,
+ StructureImportSettings.TFType tempfacType) throws IOException
+ {
+ AlignmentI al = super.readFile(selectedFile, file, sourceType,
+ fileFormat, tempfacType);
+ return al;
+ }
+
+ @Override
public AlignmentI readFile(String file, DataSourceType sourceType,
FileFormatI fileFormat) throws IOException
{