Wrap alignment with annotations

[jalview.git] / src / jalview / io / HTMLOutput.java

diff --git a/src/jalview/io/HTMLOutput.java b/src/jalview/io/HTMLOutput.java
index e4dc83e..08eacd6 100755 (executable)
--- a/src/jalview/io/HTMLOutput.java
+++ b/src/jalview/io/HTMLOutput.java
@@ -205,9 +205,9 @@ public class HTMLOutput
         "<table border=\"0\"  cellpadding=\"0\" cellspacing=\"0\">\n");\r
 \r
     for (int startRes = 0; startRes < al.getWidth();\r
-         startRes += av.getChunkWidth())\r
+         startRes += av.getWrappedWidth())\r
     {\r
-      int endRes = startRes + av.getChunkWidth();\r
+      int endRes = startRes + av.getWrappedWidth();\r
 \r
       if (endRes > al.getWidth())\r
       {\r