public class HTMLOutput
{
AlignViewport av;
+
SequenceRenderer sr;
+
FeatureRenderer fr;
+
Color color;
- public HTMLOutput(AlignmentPanel ap, SequenceRenderer sr, FeatureRenderer fr1)
+ public HTMLOutput(AlignmentPanel ap, SequenceRenderer sr,
+ FeatureRenderer fr1)
{
this.av = ap.av;
this.sr = sr;
fr = new FeatureRenderer(ap);
fr.transferSettings(fr1);
- JalviewFileChooser chooser = new JalviewFileChooser(jalview.bin.Cache.
- getProperty(
- "LAST_DIRECTORY"), new String[]
- {"html"},
- new String[]
- {"HTML files"}, "HTML files");
+ JalviewFileChooser chooser = new JalviewFileChooser(jalview.bin.Cache
+ .getProperty("LAST_DIRECTORY"), new String[]
+ { "html" }, new String[]
+ { "HTML files" }, "HTML files");
chooser.setFileView(new JalviewFileView());
chooser.setDialogTitle("Save as HTML");
if (value == JalviewFileChooser.APPROVE_OPTION)
{
String choice = chooser.getSelectedFile().getPath();
- jalview.bin.Cache.setProperty("LAST_DIRECTORY",
- chooser.getSelectedFile().getParent());
+ jalview.bin.Cache.setProperty("LAST_DIRECTORY", chooser
+ .getSelectedFile().getParent());
try
{
PrintWriter out = new java.io.PrintWriter(new java.io.FileWriter(
- choice));
+ choice));
out.println("<HTML>");
out.println("<style type=\"text/css\">");
out.println("<!--");
- out.print("td {font-family: \"" + av.getFont().getFamily() +
- "\", \"" + av.getFont().getName() + "\", mono; " +
- "font-size: " + av.getFont().getSize() + "px; ");
+ out.print("td {font-family: \"" + av.getFont().getFamily()
+ + "\", \"" + av.getFont().getName() + "\", mono; "
+ + "font-size: " + av.getFont().getSize() + "px; ");
if (av.getFont().getStyle() == Font.BOLD)
{
out.println("\n</body>\n</html>");
out.close();
jalview.util.BrowserLauncher.openURL("file:///" + choice);
- }
- catch (Exception ex)
+ } catch (Exception ex)
{
ex.printStackTrace();
}
void drawUnwrappedAlignment(PrintWriter out)
{
out.println("<table border=\"1\"><tr><td>\n");
- out.println(
- "<table border=\"0\" cellpadding=\"0\" cellspacing=\"0\">\n");
+ out
+ .println("<table border=\"0\" cellpadding=\"0\" cellspacing=\"0\">\n");
- //////////////
+ // ////////////
SequenceI seq;
AlignmentI alignment = av.getAlignment();
out.println("<td colspan=\"9\">" + i + "<br>|</td><td></td>");
}
- out.println("<td colspan=\"3\"></td><td colspan=\"3\">" + i +
- "<br>|</td>");
+ out.println("<td colspan=\"3\"></td><td colspan=\"3\">" + i
+ + "<br>|</td>");
out.println("</tr>");
for (i = 0; i < alignment.getHeight(); i++)
String id = seq.getDisplayId(av.getShowJVSuffix());
- out.println("<tr><td nowrap>" + id +
- " </td>");
+ out.println("<tr><td nowrap>" + id + " </td>");
for (int res = 0; res < seq.getLength(); res++)
{
if (color.getRGB() < -1)
{
- out.println("<td bgcolor=\"#" +
- jalview.util.Format.getHexString(color) + "\">" +
- seq.getCharAt(res) + "</td>");
+ out.println("<td bgcolor=\"#"
+ + jalview.util.Format.getHexString(color) + "\">"
+ + seq.getCharAt(res) + "</td>");
}
else
{
out.println("</tr>");
}
- //////////////
+ // ////////////
out.println("</table>");
out.println("</td></tr></table>");
}
void drawWrappedAlignment(PrintWriter out)
{
- ////////////////////////////////////
- /// How many sequences and residues can we fit on a printable page?
+ // //////////////////////////////////
+ // / How many sequences and residues can we fit on a printable page?
AlignmentI al = av.getAlignment();
SequenceI seq;
String r;
String b;
out.println("<table border=\"1\"><tr><td>\n");
- out.println(
- "<table border=\"0\" cellpadding=\"0\" cellspacing=\"0\">\n");
+ out
+ .println("<table border=\"0\" cellpadding=\"0\" cellspacing=\"0\">\n");
- for (int startRes = 0; startRes < al.getWidth();
- startRes += av.getWrappedWidth())
+ for (int startRes = 0; startRes < al.getWidth(); startRes += av
+ .getWrappedWidth())
{
int endRes = startRes + av.getWrappedWidth();
String id = seq.getDisplayId(av.getShowJVSuffix());
- out.println("<td nowrap>" + id +
- " </td>");
+ out.println("<td nowrap>" + id + " </td>");
if (av.getScaleLeftWrapped())
{
}
else
{
- out.println("<td nowrap>" + startPos +
- " </td>");
+ out.println("<td nowrap>" + startPos + " </td>");
}
}
if (color.getRGB() < -1)
{
- out.println("<td bgcolor=\"#" +
- jalview.util.Format.getHexString(color) + "\">" +
- seq.getCharAt(res) + "</td>");
+ out.println("<td bgcolor=\"#"
+ + jalview.util.Format.getHexString(color) + "\">"
+ + seq.getCharAt(res) + "</td>");
}
else
{
}
- if (av.getScaleRightWrapped() &&
- endRes < startRes + av.getWrappedWidth())
+ if (av.getScaleRightWrapped()
+ && endRes < startRes + av.getWrappedWidth())
{
- out.println("<td colspan=\"" +
- (startRes + av.getWrappedWidth() - endRes) + "\">"
- + " </td>");
+ out.println("<td colspan=\""
+ + (startRes + av.getWrappedWidth() - endRes) + "\">"
+ + " </td>");
}
if (av.getScaleRightWrapped() && startPos < endPos)
{
- out.println("<td nowrap> " + endPos +
- " </td>");
+ out.println("<td nowrap> " + endPos + " </td>");
}
out.println("</tr>");
public static String getImageMapHTML()
{
return new String(
- "<html>\n"
- + "<head>\n"
- + "<script language=\"JavaScript\">\n"
- + "var ns4 = document.layers;\n"
- + "var ns6 = document.getElementById && !document.all;\n"
- + "var ie4 = document.all;\n"
- + "offsetX = 0;\n"
- + "offsetY = 20;\n"
- + "var toolTipSTYLE=\"\";\n"
- + "function initToolTips()\n"
- + "{\n"
- + " if(ns4||ns6||ie4)\n"
- + " {\n"
- + " if(ns4) toolTipSTYLE = document.toolTipLayer;\n"
- + " else if(ns6) toolTipSTYLE = document.getElementById(\"toolTipLayer\").style;\n"
- + " else if(ie4) toolTipSTYLE = document.all.toolTipLayer.style;\n"
- + " if(ns4) document.captureEvents(Event.MOUSEMOVE);\n"
- + " else\n"
- + " {\n"
- + " toolTipSTYLE.visibility = \"visible\";\n"
- + " toolTipSTYLE.display = \"none\";\n"
- + " }\n"
- + " document.onmousemove = moveToMouseLoc;\n"
- + " }\n"
- + "}\n"
- + "function toolTip(msg, fg, bg)\n"
- + "{\n"
- + " if(toolTip.arguments.length < 1) // hide\n"
- + " {\n"
- + " if(ns4) toolTipSTYLE.visibility = \"hidden\";\n"
- + " else toolTipSTYLE.display = \"none\";\n"
- + " }\n"
- + " else // show\n"
- + " {\n"
- + " if(!fg) fg = \"#555555\";\n"
- + " if(!bg) bg = \"#FFFFFF\";\n"
- + " var content =\n"
- + " '<table border=\"0\" cellspacing=\"0\" cellpadding=\"1\" bgcolor=\"' + fg + '\"><td>' +\n"
- + " '<table border=\"0\" cellspacing=\"0\" cellpadding=\"1\" bgcolor=\"' + bg + \n"
- +
- " '\"><td align=\"center\"><font face=\"sans-serif\" color=\"' + fg +\n"
- + " '\" size=\"-2\"> ' + msg +\n"
- + " ' </font></td></table></td></table>';\n"
- + " if(ns4)\n"
- + " {\n"
- + " toolTipSTYLE.document.write(content);\n"
- + " toolTipSTYLE.document.close();\n"
- + " toolTipSTYLE.visibility = \"visible\";\n"
- + " }\n"
- + " if(ns6)\n"
- + " {\n"
- +
- " document.getElementById(\"toolTipLayer\").innerHTML = content;\n"
- + " toolTipSTYLE.display='block'\n"
- + " }\n"
- + " if(ie4)\n"
- + " {\n"
- + " document.all(\"toolTipLayer\").innerHTML=content;\n"
- + " toolTipSTYLE.display='block'\n"
- + " }\n"
- + " }\n"
- + "}\n"
- + "function moveToMouseLoc(e)\n"
- + "{\n"
- + " if(ns4||ns6)\n"
- + " {\n"
- + " x = e.pageX;\n"
- + " y = e.pageY;\n"
- + " }\n"
- + " else\n"
- + " {\n"
- + " x = event.x + document.body.scrollLeft;\n"
- + " y = event.y + document.body.scrollTop;\n"
- + " }\n"
- + " toolTipSTYLE.left = x + offsetX;\n"
- + " toolTipSTYLE.top = y + offsetY;\n"
- + " return true;\n"
- + "}\n"
- + "</script>\n"
- + "</head>\n"
- + "<body>\n"
- + "<div id=\"toolTipLayer\" style=\"position:absolute; visibility: hidden\"></div>\n"
- + "<script language=\"JavaScript\"><!--\n"
- + "initToolTips(); //--></script>\n");
+ "<html>\n"
+ + "<head>\n"
+ + "<script language=\"JavaScript\">\n"
+ + "var ns4 = document.layers;\n"
+ + "var ns6 = document.getElementById && !document.all;\n"
+ + "var ie4 = document.all;\n"
+ + "offsetX = 0;\n"
+ + "offsetY = 20;\n"
+ + "var toolTipSTYLE=\"\";\n"
+ + "function initToolTips()\n"
+ + "{\n"
+ + " if(ns4||ns6||ie4)\n"
+ + " {\n"
+ + " if(ns4) toolTipSTYLE = document.toolTipLayer;\n"
+ + " else if(ns6) toolTipSTYLE = document.getElementById(\"toolTipLayer\").style;\n"
+ + " else if(ie4) toolTipSTYLE = document.all.toolTipLayer.style;\n"
+ + " if(ns4) document.captureEvents(Event.MOUSEMOVE);\n"
+ + " else\n"
+ + " {\n"
+ + " toolTipSTYLE.visibility = \"visible\";\n"
+ + " toolTipSTYLE.display = \"none\";\n"
+ + " }\n"
+ + " document.onmousemove = moveToMouseLoc;\n"
+ + " }\n"
+ + "}\n"
+ + "function toolTip(msg, fg, bg)\n"
+ + "{\n"
+ + " if(toolTip.arguments.length < 1) // hide\n"
+ + " {\n"
+ + " if(ns4) toolTipSTYLE.visibility = \"hidden\";\n"
+ + " else toolTipSTYLE.display = \"none\";\n"
+ + " }\n"
+ + " else // show\n"
+ + " {\n"
+ + " if(!fg) fg = \"#555555\";\n"
+ + " if(!bg) bg = \"#FFFFFF\";\n"
+ + " var content =\n"
+ + " '<table border=\"0\" cellspacing=\"0\" cellpadding=\"1\" bgcolor=\"' + fg + '\"><td>' +\n"
+ + " '<table border=\"0\" cellspacing=\"0\" cellpadding=\"1\" bgcolor=\"' + bg + \n"
+ + " '\"><td align=\"center\"><font face=\"sans-serif\" color=\"' + fg +\n"
+ + " '\" size=\"-2\"> ' + msg +\n"
+ + " ' </font></td></table></td></table>';\n"
+ + " if(ns4)\n"
+ + " {\n"
+ + " toolTipSTYLE.document.write(content);\n"
+ + " toolTipSTYLE.document.close();\n"
+ + " toolTipSTYLE.visibility = \"visible\";\n"
+ + " }\n"
+ + " if(ns6)\n"
+ + " {\n"
+ + " document.getElementById(\"toolTipLayer\").innerHTML = content;\n"
+ + " toolTipSTYLE.display='block'\n"
+ + " }\n"
+ + " if(ie4)\n"
+ + " {\n"
+ + " document.all(\"toolTipLayer\").innerHTML=content;\n"
+ + " toolTipSTYLE.display='block'\n"
+ + " }\n"
+ + " }\n"
+ + "}\n"
+ + "function moveToMouseLoc(e)\n"
+ + "{\n"
+ + " if(ns4||ns6)\n"
+ + " {\n"
+ + " x = e.pageX;\n"
+ + " y = e.pageY;\n"
+ + " }\n"
+ + " else\n"
+ + " {\n"
+ + " x = event.x + document.body.scrollLeft;\n"
+ + " y = event.y + document.body.scrollTop;\n"
+ + " }\n"
+ + " toolTipSTYLE.left = x + offsetX;\n"
+ + " toolTipSTYLE.top = y + offsetY;\n"
+ + " return true;\n"
+ + "}\n"
+ + "</script>\n"
+ + "</head>\n"
+ + "<body>\n"
+ + "<div id=\"toolTipLayer\" style=\"position:absolute; visibility: hidden\"></div>\n"
+ + "<script language=\"JavaScript\"><!--\n"
+ + "initToolTips(); //--></script>\n");
}
}