+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.io;
import jalview.api.AlignExportSettingI;
AlignViewport av;
FeatureRenderer fr;
- AlignmentPanel ap;
+ AlignmentPanel ap;
public HtmlSvgOutput(File file, AlignmentPanel ap)
{
if (file == null)
{
- JalviewFileChooser chooser = getHTMLChooser();
- chooser.setFileView(new jalview.io.JalviewFileView());
- chooser.setDialogTitle(ap.alignFrame.getTitle());
- chooser.setToolTipText(MessageManager.getString("action.save"));
- int value = chooser.showSaveDialog(ap.alignFrame);
+ JalviewFileChooser chooser = getHTMLChooser();
+ chooser.setFileView(new jalview.io.JalviewFileView());
+ chooser.setDialogTitle(ap.alignFrame.getTitle());
+ chooser.setToolTipText(MessageManager.getString("action.save"));
+ int value = chooser.showSaveDialog(ap.alignFrame);
- if (value == jalview.io.JalviewFileChooser.APPROVE_OPTION)
- {
- jalview.bin.Cache.setProperty("LAST_DIRECTORY", chooser
- .getSelectedFile().getParent());
- file = chooser.getSelectedFile();
- }
+ if (value == jalview.io.JalviewFileChooser.APPROVE_OPTION)
+ {
+ jalview.bin.Cache.setProperty("LAST_DIRECTORY", chooser
+ .getSelectedFile().getParent());
+ file = chooser.getSelectedFile();
+ }
+ else
+ {
+ return;
+ }
}
AlignmentDimension aDimension = ap.getAlignmentDimension();
.getDefault("EXPORT_EMBBED_BIOJSON", "true"));
if (isEmbbedBioJSON)
{
- AlignExportSettingI exportSettings = new AlignExportSettingI(){
+ AlignExportSettingI exportSettings = new AlignExportSettingI()
+ {
@Override
public boolean isExportHiddenSequences()
{
{
return false;
}
-
+
};
AlignmentExportData exportData = jalview.gui.AlignFrame
.getAlignmentForExport(JSONFile.FILE_DESC, av,
exportSettings);
jsonData = new FormatAdapter(ap, exportData.getSettings())
- .formatSequences(JSONFile.FILE_DESC, exportData
- .getAlignment(), exportData.getOmitHidden(),
+ .formatSequences(JSONFile.FILE_DESC,
+ exportData.getAlignment(),
+ exportData.getOmitHidden(),
exportData.getStartEndPostions(),
av.getColumnSelection());
}
if (!(System.getProperty("java.awt.headless") != null && System
.getProperty("java.awt.headless").equals("true")))
{
- jalview.util.BrowserLauncher.openURL("file:///" + file);
+ jalview.util.BrowserLauncher.openURL("file:///" + file);
}
} catch (Exception e)
{
e.printStackTrace();
}
}
-
+
static JalviewFileChooser getHTMLChooser()
{
return new jalview.io.JalviewFileChooser(
- jalview.bin.Cache.getProperty("LAST_DIRECTORY"), new String[]
- { "html" }, new String[]
- { "Hypertext Markup Language" }, "Hypertext Markup Language");
+ jalview.bin.Cache.getProperty("LAST_DIRECTORY"),
+ new String[] { "html" },
+ new String[] { "Hypertext Markup Language" },
+ "Hypertext Markup Language");
}
public int printUnwrapped(int pwidth, int pheight, int pi, Graphics... pg)
- fm.stringWidth(seq.getDisplayId(av.getShowJVSuffix()))
- 4;
}
- pg[0].drawString(
- seq.getDisplayId(av.getShowJVSuffix()),
- xPos,
+ pg[0].drawString(seq.getDisplayId(av.getShowJVSuffix()), xPos,
(((i - startSeq) * av.getCharHeight()) + av.getCharHeight())
- (av.getCharHeight() / 5));
}
return Printable.PAGE_EXISTS;
}
-
+
private String getHtml(String titleSvg, String alignmentSvg,
String jsonData)
{
htmlSvg.append("<div class=\"align\" >");
htmlSvg.append(
"<div class=\"sub-category-container\"> <div style=\"overflow-x: scroll;\">")
- .append(alignmentSvg)
-.append("</div></div>")
- .append("</div>");
+ .append(alignmentSvg).append("</div></div>").append("</div>");
htmlSvg.append("</div>");
htmlSvg.append("<script language=\"JavaScript\" type=\"text/javascript\" src=\"http://ajax.googleapis.com/ajax/libs/jquery/1/jquery.min.js\"></script>\n"