JAL-1517 source formatting

[jalview.git] / src / jalview / io / IdentifyFile.java

diff --git a/src/jalview/io/IdentifyFile.java b/src/jalview/io/IdentifyFile.java
index f80b3ca..08d4dca 100755 (executable)
--- a/src/jalview/io/IdentifyFile.java
+++ b/src/jalview/io/IdentifyFile.java
@@ -6,14 +6,16 @@
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.io;
@@ -132,11 +134,11 @@ public class IdentifyFile
 
           break;
         }
-        
+
         if ((data.indexOf("<") > -1))
         {
           reply = "RNAML";
-          
+
           break;
         }
 
@@ -167,8 +169,7 @@ public class IdentifyFile
 
           break;
         }
-        
-        
+
         else if (data.indexOf(">") > -1)
         {
           // FASTA, PIR file or BLC file
@@ -197,13 +198,16 @@ public class IdentifyFile
               starterm = (data1 != null && data1.indexOf("*") > -1)
                       || (data2 != null && data2.indexOf("*") > -1);
             }
-            if (data2 != null && (c1=data.indexOf("*")) > -1)
+            if (data2 != null && (c1 = data.indexOf("*")) > -1)
             {
-              if (c1==0 && c1 == data2.indexOf("*"))
+              if (c1 == 0 && c1 == data2.indexOf("*"))
               {
                 reply = "BLC";
-              } else {
-                reply = "FASTA"; // possibly a bad choice - may be recognised as PIR 
+              }
+              else
+              {
+                reply = "FASTA"; // possibly a bad choice - may be recognised as
+                                 // PIR
               }
               // otherwise can still possibly be a PIR file
             }