Merge branch 'JAL-1199-Stk_writing' into rnaml_test

[jalview.git] / src / jalview / io / IdentifyFile.java

diff --git a/src/jalview/io/IdentifyFile.java b/src/jalview/io/IdentifyFile.java
index d30ed20..1cdd95d 100755 (executable)
--- a/src/jalview/io/IdentifyFile.java
+++ b/src/jalview/io/IdentifyFile.java
@@ -1,13 +1,13 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
@@ -18,7 +18,6 @@
 package jalview.io;
 
 import java.io.*;
-import java.net.*;
 
 /**
  * DOCUMENT ME!
@@ -132,6 +131,13 @@ public class IdentifyFile
 
           break;
         }
+        
+        if ((data.indexOf("<") > -1))
+        {
+          reply = "RNAML";
+          
+          break;
+        }
 
         if ((data.length() < 1) || (data.indexOf("#") == 0))
         {
@@ -160,6 +166,8 @@ public class IdentifyFile
 
           break;
         }
+        
+        
         else if (data.indexOf(">") > -1)
         {
           // FASTA, PIR file or BLC file