Wait for response from server before next sequence

[jalview.git] / src / jalview / io / IdentifyFile.java

diff --git a/src/jalview/io/IdentifyFile.java b/src/jalview/io/IdentifyFile.java
index 348b085..9a248e5 100755 (executable)
--- a/src/jalview/io/IdentifyFile.java
+++ b/src/jalview/io/IdentifyFile.java
@@ -1,6 +1,6 @@
 /*\r
 * Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
 *\r
 * This program is free software; you can redistribute it and/or\r
 * modify it under the terms of the GNU General Public License\r
@@ -76,6 +76,13 @@ public class IdentifyFile
             {\r
                 data = data.toUpperCase();\r
 \r
+                if ( (data.indexOf("# STOCKHOLM") > -1))\r
+                {\r
+                  reply = "STH";\r
+\r
+                  break;\r
+                }\r
+\r
                 if ((data.indexOf("#") == 0) || (data.length() < 1))\r
                 {\r
                     continue;\r