Watch out for - symbol lin jnet files

[jalview.git] / src / jalview / io / IdentifyFile.java

diff --git a/src/jalview/io/IdentifyFile.java b/src/jalview/io/IdentifyFile.java
index 9a248e5..e97ec40 100755 (executable)
--- a/src/jalview/io/IdentifyFile.java
+++ b/src/jalview/io/IdentifyFile.java
@@ -122,13 +122,25 @@ public class IdentifyFile
                     // could be BLC file, read next line to confirm\r
                     data = reader.readLine();\r
 \r
-                    if (data.indexOf(">") > -1 || data.indexOf("*") >-1 )\r
+                    if (data.indexOf(">") > -1)\r
                     {\r
                         reply = "BLC";\r
                     }\r
                     else\r
                     {\r
+                      //Is this a single line BLC file?\r
+                      reader.readLine();\r
+                      String data2 = reader.readLine();\r
+                      if ( data2 != null\r
+                           && data.indexOf("*")>-1\r
+                           && data.indexOf("*")==data2.indexOf("*"))\r
+                      {\r
+                        reply = "BLC";\r
+                      }\r
+                      else\r
+                      {\r
                         reply = "FASTA";\r
+                      }\r
                     }\r
 \r
                     break;\r