Any character non aa or nucleotide is a space

[jalview.git] / src / jalview / io / JPredFile.java

diff --git a/src/jalview/io/JPredFile.java b/src/jalview/io/JPredFile.java
index c431cc4..3f308be 100755 (executable)
--- a/src/jalview/io/JPredFile.java
+++ b/src/jalview/io/JPredFile.java
@@ -270,13 +270,6 @@ public class JPredFile extends AlignFile
                     seq_entries.elementAt(i).toString(), 1,
                     seq_entries.elementAt(i).toString().length());
 
-            if (!Symscores.containsKey(ids.elementAt(i)) &&
-                    !isValidProteinSequence(newSeq.getSequence()))
-            {
-                throw new IOException("JPredConcise: "
-                                      +AppletFormatAdapter.INVALID_CHARACTERS +" : "
-                                      +ids.elementAt(i).toString() + ")");
-            }
 
             if (maxLength != seq_entries.elementAt(i).toString().length())
             {