JAL-1683 replace year/version strings with tokens in source

[jalview.git] / src / jalview / io / JPredFile.java

diff --git a/src/jalview/io/JPredFile.java b/src/jalview/io/JPredFile.java
index c2bbe9e..af8c949 100755 (executable)
--- a/src/jalview/io/JPredFile.java
+++ b/src/jalview/io/JPredFile.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -29,6 +29,7 @@ import java.io.*;
 import java.util.*;
 
 import jalview.datamodel.*;
+import jalview.util.MessageManager;
 
 /**
  * Parser for the JPred/JNet concise format. This is a series of CSV lines, each
@@ -293,9 +294,7 @@ public class JPredFile extends AlignFile
 
       if (maxLength != seq_entries.elementAt(i).toString().length())
       {
-        throw new IOException("JPredConcise: Entry ("
-                + ids.elementAt(i).toString()
-                + ") has an unexpected number of columns");
+        throw new IOException(MessageManager.formatMessage("exception.jpredconcide_entry_has_unexpected_number_of_columns", new String[]{ids.elementAt(i).toString()}));
       }
 
       if ((newSeq.getName().startsWith("QUERY") || newSeq.getName()
@@ -319,9 +318,7 @@ public class JPredFile extends AlignFile
       } catch (Exception e)
       {
         tal = null;
-        IOException ex = new IOException(
-                "Couldn't parse concise annotation for prediction profile.\n"
-                        + e);
+        IOException ex = new IOException(MessageManager.formatMessage("exception.couldnt_parse_concise_annotation_for_prediction", new String[]{e.getMessage()}));
         e.printStackTrace(); // java 1.1 does not have :
                              // ex.setStackTrace(e.getStackTrace());
         throw ex;
@@ -351,7 +348,7 @@ public class JPredFile extends AlignFile
    * @param args
    *          DOCUMENT ME!
    */
-  public static void main(String[] args) 
+  public static void main(String[] args)
   {
     try
     {