JAL-2388 Working hidden regions hide/show in desktop

[jalview.git] / src / jalview / io / JSONFile.java

diff --git a/src/jalview/io/JSONFile.java b/src/jalview/io/JSONFile.java
index dcf0f5d..8dbede6 100644 (file)
--- a/src/jalview/io/JSONFile.java
+++ b/src/jalview/io/JSONFile.java
@@ -83,8 +83,6 @@ public class JSONFile extends AlignFile implements ComplexAlignFile
 
   private FeatureRenderer fr;
 
-  private List<int[]> hiddenColumnsList;
-
   private HiddenColumns hiddenColumns;
 
   private List<String> hiddenSeqRefs;
@@ -282,7 +280,7 @@ public class JSONFile extends AlignFile implements ComplexAlignFile
     {
       List<int[]> hiddenCols = getViewport().getAlignment()
               .getHiddenColumns()
-              .getListOfCols();
+              .getHiddenRegions();
       StringBuilder hiddenColsBuilder = new StringBuilder();
       for (int[] range : hiddenCols)
       {
@@ -667,12 +665,12 @@ public class JSONFile extends AlignFile implements ComplexAlignFile
     String hiddenCols = (String) jvSettingsJson.get("hiddenCols");
     if (hiddenCols != null && !hiddenCols.isEmpty())
     {
-      HiddenColumns hidden = new HiddenColumns();
+      hiddenColumns = new HiddenColumns();
       String[] rangeStrings = hiddenCols.split(";");
       for (String rangeString : rangeStrings)
       {
         String[] range = rangeString.split("-");
-        hidden.hideColumns(Integer.valueOf(range[0]),
+        hiddenColumns.hideColumns(Integer.valueOf(range[0]),
                 Integer.valueOf(range[1]));
       }
     }