JAL-2835 refactored to extract specific consequence term per transcript and allele

[jalview.git] / src / jalview / io / JalviewFileView.java

diff --git a/src/jalview/io/JalviewFileView.java b/src/jalview/io/JalviewFileView.java
index 3461110..b2fe587 100755 (executable)
--- a/src/jalview/io/JalviewFileView.java
+++ b/src/jalview/io/JalviewFileView.java
@@ -38,14 +38,14 @@ public class JalviewFileView extends FileView
   private void loadExtensions()
   {
     extensions = new HashMap<String, String>();
-    for (FileFormatI ff : FileFormat.values())
+    for (FileFormatI ff : FileFormats.getInstance().getFormats())
     {
-      String desc = ff.toString() + " file";
+      String desc = ff.getName() + " file";
       String exts = ff.getExtensions();
       for (String ext : exts.split(","))
       {
-        extensions.put(ext.trim().toLowerCase(), desc
-                + ("jar".equals(ext) ? " (old)" : ""));
+        extensions.put(ext.trim().toLowerCase(),
+                desc + ("jar".equals(ext) ? " (old)" : ""));
       }
     }
   }
@@ -136,8 +136,8 @@ public class JalviewFileView extends FileView
         }
         else
         {
-          System.err
-                  .println("JalviewFileView.createImageIcon: Couldn't find file: "
+          System.err.println(
+                  "JalviewFileView.createImageIcon: Couldn't find file: "
                           + filePath);
         }
         icons.put(filePath, icon);