House keeping

[jalview.git] / src / jalview / io / JnetAnnotationMaker.java

diff --git a/src/jalview/io/JnetAnnotationMaker.java b/src/jalview/io/JnetAnnotationMaker.java
index 7252e5d..5c95a3f 100755 (executable)
--- a/src/jalview/io/JnetAnnotationMaker.java
+++ b/src/jalview/io/JnetAnnotationMaker.java
@@ -1,23 +1,27 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.io;
 
 import jalview.datamodel.*;
+import jalview.util.MessageManager;
 
 public class JnetAnnotationMaker
 {
@@ -57,13 +61,12 @@ public class JnetAnnotationMaker
     if ((delMap != null && delMap.length > width)
             || (delMap == null && gapmap.length != width))
     {
-      throw (new Exception("Number of residues in "
-              + (delMap == null ? "" : " mapped ")
-              + "supposed query sequence ('"
-              + al.getSequenceAt(firstSeq).getName() + "'\n"
-              + al.getSequenceAt(firstSeq).getSequenceAsString()
-              + ")\ndiffer from number of prediction sites in prediction ("
-              + width + ")"));
+      throw (new Exception(MessageManager.formatMessage("exception.number_of_residues_in_query_sequence_differ_from_prediction", new String[]{
+                 (delMap == null ? "" : MessageManager.getString("label.mapped")),
+                 al.getSequenceAt(firstSeq).getName(),
+                 al.getSequenceAt(firstSeq).getSequenceAsString(),
+                 Integer.valueOf(width).toString()
+      })));
     }
 
     AlignmentAnnotation annot;