MessageManager
.formatMessage(
"exception.number_of_residues_in_query_sequence_differ_from_prediction",
- new String[]
- {
+ new String[] {
(delMap == null ? "" : MessageManager
.getString("label.mapped")),
al.getSequenceAt(firstSeq).getName(),
for (int spos = 0; spos < width; spos++)
{
int sposw = (delMap == null) ? gapmap[spos]
- : delMap[gapmap[spos]];
+ : gapmap[delMap[spos]];
if (firstsol)
{
sol[sposw] = new Annotation(0f);
}
if (preds[i].getCharAt(spos) == 'B'
- && (sol[spos].value == 0f || sol[spos].value < amnt))
+ && (sol[sposw].value == 0f || sol[sposw].value < amnt))
{
sol[sposw].value = amnt;
}