* modify to MSF format: uses '.' for internal gaps,
* and '~' for leading or trailing gaps
*/
- String seqString = sqs[i].getSequenceAsString()
- .replace('-', '.');
+ String seqString = sqs[i].getSequenceAsString().replace('-', '.');
StringBuilder sb = new StringBuilder(seqString);
i++;
}
- Format maxLenpad = new Format("%" + (new String("" + max)).length()
- + "d");
- Format maxChkpad = new Format("%" + (new String("1" + max)).length()
- + "d");
+ Format maxLenpad = new Format(
+ "%" + (new String("" + max)).length() + "d");
+ Format maxChkpad = new Format(
+ "%" + (new String("1" + max)).length() + "d");
i = 0;
int bigChecksum = 0;