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use 1 & -1 if start/end not specified
[jalview.git] / src / jalview / io / MSFfile.java
diff --git a/src/jalview/io/MSFfile.java b/src/jalview/io/MSFfile.java
index 5f81215..8e452e6 100755 (executable)
--- a/src/jalview/io/MSFfile.java
+++ b/src/jalview/io/MSFfile.java
@@ -151,7 +151,7 @@ public class MSFfile extends AlignFile
                 String seq = seqhash.get(head).toString();\r
 \r
                 int start = 1;\r
-                int end = seq.length();\r
+                int end =  -1;\r
 \r
                 if (maxLength < head.length())\r
                 {\r