}\r
}\r
} catch (IOException e) {\r
- System.out.println("Exception parsing MSFFile " + e);\r
+ System.err.println("Exception parsing MSFFile " + e);\r
+ e.printStackTrace();\r
}\r
\r
this.noSeqs = headers.size();\r
seqs.addElement(newSeq);\r
\r
} else {\r
- System.out.println("Can't find sequence for " + headers.elementAt(i));\r
+ System.err.println("MSFFile Parser: Can't find sequence for " + headers.elementAt(i));\r
}\r
}\r
\r
}\r
}\r
} catch (Exception e) {\r
- System.err.println("Exception " + e);\r
+ System.err.println("Exception during MSF Checksum calculation");\r
+ e.printStackTrace();\r
}\r
}\r
return check % 10000;\r