Any character non aa or nucleotide is a space

[jalview.git] / src / jalview / io / MSFfile.java

diff --git a/src/jalview/io/MSFfile.java b/src/jalview/io/MSFfile.java
index 61b3528..f21a106 100755 (executable)
--- a/src/jalview/io/MSFfile.java
+++ b/src/jalview/io/MSFfile.java
@@ -145,14 +145,6 @@ public class MSFfile extends AlignFile
 \r
                 // Replace ~ with a sensible gap character\r
                 seq = seq.replace('~', '-');\r
-                if (!isValidProteinSequence(seq.toCharArray()))\r
-                {\r
-                    throw new IOException(AppletFormatAdapter.\r
-                                          INVALID_CHARACTERS\r
-                                          + " : " + head\r
-                                          + " : " + invalidCharacter);\r
-                }\r
-\r
 \r
                 Sequence newSeq = parseId(head);\r
 \r