{
if (line.indexOf("#") != 0)
{
+ // TODO: verify pfam format requires spaces and not tab characters - if not upgrade to use stevesoft regex and look for whitespace.
StringTokenizer str = new StringTokenizer(line, " ");
String id = "";
{
headers.addElement(id);
}
-
- tempseq.append(str.nextToken());
+ if (str.hasMoreTokens())
+ {
+ tempseq.append(str.nextToken());
+ }
}
}
}