Sequence newSeq = parseId(headers.elementAt(i).toString());\r
newSeq.setSequence( seqhash.get(headers.elementAt(i).toString()).toString());\r
seqs.addElement(newSeq);\r
-\r
- if (!isValidProteinSequence(newSeq.getSequence()))\r
- {\r
- throw new IOException(AppletFormatAdapter.INVALID_CHARACTERS\r
- +" : "+ newSeq.getName()\r
- +" : "+invalidCharacter);\r
- }\r
- }\r
+ }\r
else\r
{\r
System.err.println("PFAM File reader: Can't find sequence for " +\r