use 1 & -1 if start/end not specified

[jalview.git] / src / jalview / io / PileUpfile.java

diff --git a/src/jalview/io/PileUpfile.java b/src/jalview/io/PileUpfile.java
index c200c5e..728d1c6 100755 (executable)
--- a/src/jalview/io/PileUpfile.java
+++ b/src/jalview/io/PileUpfile.java
@@ -131,7 +131,7 @@ public class PileUpfile
         String seq = seqhash.get(head).toString();\r
 \r
         int start = 1;\r
-        int end = seq.length();\r
+        int end = -1;\r
 \r
         if (maxLength < head.length())\r
         {\r