}
}
sqs[i] = new Sequence(id, seq, begin, end);
-
- sqs[i].setEnd(sqs[i].findPosition(sqs[i].getLength()));
+ if (seq.length()!=(end-begin+1))
+ {
+ sqs[i].setEnd(sqs[i].findPosition(sqs[i].getLength()));
+ }
String[] annot = new String[rna.length()];
Annotation[] ann = new Annotation[rna.length()];