JAL-2041 add ID,clinical_significance to feature attributes (for export)

[jalview.git] / src / jalview / io / SequenceAnnotationReport.java

diff --git a/src/jalview/io/SequenceAnnotationReport.java b/src/jalview/io/SequenceAnnotationReport.java
index 676404b..2d76d6b 100644 (file)
--- a/src/jalview/io/SequenceAnnotationReport.java
+++ b/src/jalview/io/SequenceAnnotationReport.java
@@ -23,6 +23,7 @@ package jalview.io;
 import jalview.datamodel.DBRefEntry;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
+import jalview.io.gff.GffConstants;
 import jalview.util.DBRefUtils;
 import jalview.util.UrlLink;
 
@@ -175,6 +176,12 @@ public class SequenceAnnotationReport
         {
           sb.append("; (").append(status).append(")");
         }
+        String clinSig = (String) feature
+                .getValue(GffConstants.CLINICAL_SIGNIFICANCE);
+        if (clinSig != null)
+        {
+          sb.append("; ").append(clinSig);
+        }
       }
     }
     appendLinks(sb, feature);