{
if (sb0.length() > 6)
{
- sb.append("<br/>");
+ sb.append("<br>");
}
sb.append(feature.getType()).append(" ").append(begin).append(":")
.append(end);
if (sb0.length() > 6)
{
- sb.append("<br/>");
+ sb.append("<br>");
}
// TODO: remove this hack to display link only features
boolean linkOnly = feature.getValue("linkonly") != null;
int linkindex = description.toLowerCase().indexOf("<a ");
boolean hasLink = linkindex > -1
&& linkindex < MAX_DESCRIPTION_LENGTH;
- if (description.length() > MAX_DESCRIPTION_LENGTH && !hasLink)
+ if (
+ // BH suggestion maxlength == 0 &&
+ description.length() > MAX_DESCRIPTION_LENGTH && !hasLink)
{
description = description.substring(0, MAX_DESCRIPTION_LENGTH)
+ ELLIPSIS;
{
for (List<String> urllink : createLinksFrom(null, urlstring))
{
- sb.append("<br/> <a href=\""
+ sb.append("<br> <a href=\""
+ urllink.get(3)
+ "\" target=\""
+ urllink.get(0)
.equals(urllink.get(1).toLowerCase()) ? urllink
.get(0) : (urllink.get(0) + ":" + urllink
.get(1)))
- + "</a><br/>");
+ + "</a><br>");
}
} catch (Exception x)
{
ds = ds.getDatasetSequence();
}
+
/*
* add any annotation scores
*/
AlignmentAnnotation[] anns = ds.getAnnotation();
- for (int i = 0; anns != null && i < anns.length; i++)
- {
- AlignmentAnnotation aa = anns[i];
- if (aa != null && aa.hasScore() && aa.sequenceRef != null)
+ if (anns!=null && anns.length>0) {
+ boolean first=true;
+ for (int i = 0; anns != null && i < anns.length; i++)
{
- sb.append("<br>").append(aa.label).append(": ")
- .append(aa.getScore());
+ AlignmentAnnotation aa = anns[i];
+ if (aa != null && aa.hasScore() && aa.sequenceRef != null)
+ {
+ if (first) {
+ sb.append("<br>").append("Annotation Scores<br>");
+ first=false;
+ }
+ sb.append("<br>").append(aa.label).append(": ")
+ .append(aa.getScore());
+ }
}
}
-
if (showDbRefs)
{
maxWidth = Math.max(maxWidth, appendDbRefs(sb, ds, summary));
sb.append(bitScore);
maxWidth = Math.max(maxWidth, eValue.length());
maxWidth = Math.max(maxWidth, bitScore.length());
+ sb.append("<br>");
}
- sb.append("<br>");
sb.append("</i>");
return maxWidth;
countForSource++;
if (countForSource == 1 || !summary)
{
- sb.append("<br/>");
+ sb.append("<br>");
}
if (countForSource <= MAX_REFS_PER_SOURCE || !summary)
{
}
if (moreSources)
{
- sb.append("<br/>").append(source).append(COMMA).append(ELLIPSIS);
+ sb.append("<br>").append(source).append(COMMA).append(ELLIPSIS);
}
if (ellipsis)
{
- sb.append("<br/>(");
+ sb.append("<br>(");
sb.append(MessageManager.getString("label.output_seq_details"));
sb.append(")");
}