Don't parse input id, leave it as it is

[jalview.git] / src / jalview / io / SequenceFeatureFetcher.java

diff --git a/src/jalview/io/SequenceFeatureFetcher.java b/src/jalview/io/SequenceFeatureFetcher.java
index a70aaef..b3de0f3 100755 (executable)
--- a/src/jalview/io/SequenceFeatureFetcher.java
+++ b/src/jalview/io/SequenceFeatureFetcher.java
@@ -109,9 +109,9 @@ public class SequenceFeatureFetcher implements Runnable
              seqIndex++, i++)\r
         {\r
           SequenceI sequence = (SequenceI) sequences.get(seqIndex);\r
-          if(!ids.contains(sequence.getShortName()))\r
+          if(!ids.contains(sequence.getName()))\r
           {\r
-            ids.add(sequence.getShortName());\r
+            ids.add(sequence.getName());\r
             unknownSequences.add(sequence);\r
           }\r
         }\r
@@ -205,13 +205,13 @@ public class SequenceFeatureFetcher implements Runnable
     {\r
       entry = (UniprotEntry) entries.elementAt(i);\r
       String idmatch = entry.getAccession().elementAt(0).toString();\r
-      sequence = dataset.findShortName(idmatch);\r
+      sequence = dataset.findName(idmatch);\r
 \r
       if (sequence == null)\r
       {\r
         //Sequence maybe Name, not Accession\r
-        idmatch = entry.getName().elementAt(0).toString();;\r
-        sequence = dataset.findShortName(idmatch);\r
+        idmatch = entry.getName().elementAt(0).toString();\r
+        sequence = dataset.findName(idmatch);\r
       }\r
 \r
       if (sequence == null)\r