apply jalview code style

[jalview.git] / src / jalview / io / StockholmFile.java

diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java
index 764a3d4..34ce3bf 100644 (file)
--- a/src/jalview/io/StockholmFile.java
+++ b/src/jalview/io/StockholmFile.java
@@ -1,5 +1,5 @@
 /*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)\r
  * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
  * \r
  * This file is part of Jalview.\r
@@ -98,7 +98,7 @@ public class StockholmFile extends AlignFile
     }\r
 \r
     // We define some Regexes here that will be used regularily later\r
-    rend = new Regex("\\/\\/"); // Find the end of an alignment\r
+    rend = new Regex("^\\s*\\/\\/"); // Find the end of an alignment\r
     p = new Regex("(\\S+)\\/(\\d+)\\-(\\d+)"); // split sequence id in\r
     // id/from/to\r
     s = new Regex("(\\S+)\\s+(\\S*)\\s+(.*)"); // Parses annotation subtype\r
@@ -363,8 +363,8 @@ public class StockholmFile extends AlignFile
           if (x.search(annContent))\r
           {\r
             // parse out and create alignment annotation directly.\r
-            parseAnnotationRow(annotations, x.stringMatched(1), x\r
-                    .stringMatched(2));\r
+            parseAnnotationRow(annotations, x.stringMatched(1),\r
+                    x.stringMatched(2));\r
           }\r
         }\r
         else if (annType.equals("GR"))\r