JAL-934 - refactor to use label font functions

[jalview.git] / src / jalview / io / StockholmFile.java

diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java
index b407463..e81c31a 100644 (file)
--- a/src/jalview/io/StockholmFile.java
+++ b/src/jalview/io/StockholmFile.java
@@ -1,5 +1,5 @@
 /*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)\r
  * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
  * \r
  * This file is part of Jalview.\r
@@ -363,8 +363,8 @@ public class StockholmFile extends AlignFile
           if (x.search(annContent))\r
           {\r
             // parse out and create alignment annotation directly.\r
-            parseAnnotationRow(annotations, x.stringMatched(1), x\r
-                    .stringMatched(2));\r
+            parseAnnotationRow(annotations, x.stringMatched(1),\r
+                    x.stringMatched(2));\r
           }\r
         }\r
         else if (annType.equals("GR"))\r
@@ -447,7 +447,7 @@ public class StockholmFile extends AlignFile
               ns = "";\r
             }\r
             ns += seq;\r
-            content.put(description, seq);\r
+            content.put(description, ns);\r
           }\r
           else\r
           {\r