import java.util.List;
import java.util.Vector;
-import MCview.PDBChain;
+import mc_view.PDBChain;
public abstract class StructureFile extends AlignFile
{
pdbSequence.setName(getId() + "|" + pdbSequence.getName());
PDBEntry entry = new PDBEntry();
entry.setId(getId());
+ entry.setFakedPDBId(!isPPDBIdAvailable());
entry.setType(getStructureFileType());
if (chain.id != null)
{
StructureImportSettings.setShowSeqFeatures(true);
}
- public PDBChain findChain(String id) throws Exception
+ /**
+ * Answers the first PDBChain found matching the given id, or null if none is
+ * found
+ *
+ * @param id
+ * @return
+ */
+ public PDBChain findChain(String id)
{
for (PDBChain chain : getChains())
{
return chain;
}
}
- throw new Exception("PDB chain not Found!");
+ return null;
}
public void makeResidueList()