JAL-1807 explicit imports (jalview.io.*)

[jalview.git] / src / jalview / io / TCoffeeScoreFile.java

diff --git a/src/jalview/io/TCoffeeScoreFile.java b/src/jalview/io/TCoffeeScoreFile.java
index fce7fc5..4f94be9 100644 (file)
--- a/src/jalview/io/TCoffeeScoreFile.java
+++ b/src/jalview/io/TCoffeeScoreFile.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -25,6 +25,7 @@ import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.Annotation;
 import jalview.datamodel.SequenceI;
+import jalview.util.Comparison;
 
 import java.awt.Color;
 import java.io.IOException;
@@ -592,7 +593,7 @@ public class TCoffeeScoreFile extends AlignFile
       for (int j = 0; j < jSize; j++)
       {
         byte val = srow[j];
-        if (s != null && jalview.util.Comparison.isGap(s.getCharAt(j)))
+        if (s != null && Comparison.isGap(s.getCharAt(j)))
         {
           annotations[j] = null;
           if (val > 0)