C&P changes

[jalview.git] / src / jalview / io / WSWUBlastClient.java

diff --git a/src/jalview/io/WSWUBlastClient.java b/src/jalview/io/WSWUBlastClient.java
index 1622187..160d9f0 100755 (executable)
--- a/src/jalview/io/WSWUBlastClient.java
+++ b/src/jalview/io/WSWUBlastClient.java
@@ -12,13 +12,11 @@ import java.awt.*;
 public class WSWUBlastClient\r
 {\r
   JInternalFrame outputFrame = new JInternalFrame();\r
-  CutAndPasteTransfer output = new CutAndPasteTransfer(false);\r
+  CutAndPasteTransfer output = new CutAndPasteTransfer();\r
   int jobsRunning = 0;\r
 \r
   public WSWUBlastClient(AlignmentI al, ArrayList ids)\r
   {\r
-\r
-    output.formatForOutput();\r
     outputFrame.setContentPane(output);\r
     output.setText("To display sequence features an exact Uniprot id with 100% sequence identity match must be entered."\r
                 +"\nIn order to display these features, try changing the names of your sequences to the ids suggested below.");\r
@@ -111,7 +109,7 @@ public class WSWUBlastClient
                 jobsRunning --;\r
           }\r
           Thread.sleep(5000);\r
-          System.out.println("I'm alive "+seqid+" "+jobid);\r
+          // System.out.println("WSWuBlastClient: I'm alive "+seqid+" "+jobid); // log.debug\r
         }\r
         catch (Exception ex)\r
         {}\r
@@ -140,12 +138,12 @@ public class WSWUBlastClient
         String result = (String) call.invoke(new Object[]\r
                                              {params, seqbytes});\r
         jobid = result;\r
-        System.out.println(jobid);\r
+        System.out.println("http://www.ebi.ac.uk/cgi-bin/webservices/WSWUBlast JobId '"+jobid+"'");\r
 \r
       }\r
       catch (Exception exp)\r
       {\r
-        System.err.println("ERROR:\n" + exp.toString());\r
+        System.err.println("WSWUBlastClient error:\n" + exp.toString());\r
         exp.printStackTrace();\r
       }\r
     }\r