/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.io;
import jalview.analysis.*;
import jalview.datamodel.*;
import jalview.gui.*;
+import jalview.util.MessageManager;
import uk.ac.ebi.www.*;
/**
* Creates a new WSWUBlastClient object.
*
* @param al
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param ids
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public WSWUBlastClient(AlignmentPanel ap, AlignmentI al, ArrayList ids)
{
this.ap = ap;
this.al = al;
- output
- .setText("To display sequence features an exact Uniprot id with 100% sequence identity match must be entered."
- + "\nIn order to display these features, try changing the names of your sequences to the ids suggested below."
- + "\n\nRunning WSWUBlast at EBI."
- + "\nPlease quote Pillai S., Silventoinen V., Kallio K., Senger M., Sobhany S., Tate J., Velankar S., Golovin A., Henrick K., Rice P., Stoehr P., Lopez R."
- + "\nSOAP-based services provided by the European Bioinformatics Institute."
- + "\nNucleic Acids Res. 33(1):W25-W28 (2005));");
+ output.setText(MessageManager
+ .getString("label.wswublast_client_credits"));
- Desktop.addInternalFrame(output,
- "BLASTing for unidentified sequences ", 800, 300);
+ Desktop.addInternalFrame(output, MessageManager
+ .getString("label.blasting_for_unidentified_sequence"), 800,
+ 300);
for (int i = 0; i < ids.size(); i++)
{
* DOCUMENT ME!
*
* @param id1
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param res
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
void parseResult(Sequence seq, String res)
{
imageIndex++;
imageIndex %= 9;
output.setFrameIcon(imageIcon[imageIndex]);
- output.setTitle("BLASTing for unidentified sequences - "
- + jobsRunning + " jobs running.");
+ output.setTitle(MessageManager.formatMessage("label.blasting_for_unidentified_sequence_jobs_running", new String[]{Integer.valueOf(jobsRunning).toString()}));
} catch (Exception ex)
{
}
Data inputs[] = new Data[1];
Data input = new Data();
input.setType("sequence");
- input.setContent(AlignSeq.extractGaps("-. ", sequence
- .getSequenceAsString()));
+ input.setContent(AlignSeq.extractGaps("-. ",
+ sequence.getSequenceAsString()));
inputs[0] = input;
WSWUBlastService service = new WSWUBlastServiceLocator();