desc = StringUtils.listToDelimitedString(
attributes.get("alleles"), ",");
}
+
+ /*
+ * Ensembl returns gene name as 'Name' for a transcript
+ */
+ if (SequenceOntology.getInstance().isA(sf.getType(),
+ SequenceOntology.TRANSCRIPT))
+ {
+ desc = StringUtils.listToDelimitedString(attributes.get("Name"), ",");
+ }
return desc;
}
}