int fromStart = Integer.parseInt(gffColumns[START_COL]);
int fromEnd = Integer.parseInt(gffColumns[END_COL]);
MapList mapping = constructMappingFromAlign(fromStart, fromEnd,
- toStart, toEnd, MappingType.NucleotideToNucleotide);
+ toStart, toEnd, MappingType.GenomeToCdna);
if (mapping != null)
{