if (SequenceOntology.getInstance().isSequenceVariant(sf.getType()))
{
/*
- * Ensembl returns alleles and consequence_type (amongst other details)
+ * Ensembl returns dna variants as 'alleles'
*/
- String alleles = StringUtils.listToDelimitedString(
+ desc = StringUtils.listToDelimitedString(
attributes.get("alleles"), ",");
- String consequence = StringUtils.listToDelimitedString(
- attributes.get("consequence_type"), ",");
- desc = String.format("alleles %s; consequence %s", alleles,
- consequence);
}
return desc;
}